Stem-loop cbn-mir-39-1

Accession

MI0025057

Description

Caenorhabditis brenneri cbn-mir-39-1 precursor miRNA

Gene family

MIPF0000304; mir-39

Sequence

agcugauuucaaccacgguaauaagcuccauagauagccuaUCACCGGGUGGAAAUCAGUUAG
((((((((((.(((.((((.(((.(((........))).))).))))))).))))))))))..

Structure

--          a   a    a   a   cca 
  agcugauuuc acc cggu aua gcu   u
  |||||||||| ||| |||| ||| |||    
  UUGACUAAAG UGG GCCA Uau cga   a
GA          G   -    C   c   uag 

Annotation confidence Not enough data

Genome context

Cbre_Contig28: 208178-208240 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbn-mir-39-1

Mature cbn-miR-39

• Accession: MIMAT0029925
• Description: Caenorhabditis brenneri cbn-miR-39 mature miRNA
• Sequence: 42 - UCACCGGGUGGAAAUCAGUUAG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508