Stem-loop sequence mmu-mir-290b

Accession

MI0025038 (change log)

Symbol

MGI:Mir290b

Description

Mus musculus miR-290b stem-loop

Literature search

53 open access papers mention mmu-mir-290b
(419 sentences)

Stem-loop

   -       a   -  c          aaa 
5'  gcuuaaa cua gg ggcacuuuuu   g
    ||||||| ||| || ||||||||||   a
3'  ugaguuu gau cc ccgugaaaaa   a
   a       -   a  c          aaa 

Deep sequencing

89 reads, 0 reads per million, 22 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 3218638-3218695 [-]
• Overlapping transcripts:

  antisense

  ENSMUST00000104627 ; Mir290-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-290b

• mmu-mir-295: chr7: 3220773-3220841 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-292b: chr7: 3219198-3219259 [-]
• mmu-mir-292a: chr7: 3219189-3219270 [+]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-290b: chr7: 3218638-3218695 [-]
• mmu-mir-290a: chr7: 3218626-3218708 [+]

Database links

• MGI:Mir290b
• miRBase Tracker:MI0025038

Mature sequence mmu-miR-290b-5p

• Accession: MIMAT0029900
• Sequence: 1 - gcuuaaaacuaggcggcacuuu - 22
• Deep sequencing: 28 reads, 5 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-290b-5p
  • miRDB:mmu-miR-290b-5p

Mature sequence mmu-miR-290b-3p

• Accession: MIMAT0029901
• Sequence: 37 - aagugcccccauaguuugagua - 58
• Deep sequencing: 3 reads, 3 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-290b-3p
  • miRDB:mmu-miR-290b-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).