Stem-loop sequence mmu-mir-219c

Accession

MI0025034 (change log)

Symbol

MGI:Mir219c

Description

Mus musculus miR-219c stem-loop

Literature search

47 open access papers mention mmu-mir-219c
(440 sentences)

Stem-loop

   ggac            c    --------   c 
5'     guccagacgcaa ucuc        ggc g
       |||||||||||| ||||        |||  
3'     cagguuugcguu agag        ccg g
   cuaa            a    cucagaga   a 

Deep sequencing

455 reads, 0 reads per million, 68 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 34025012-34025071 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000095531 ; Mir219-1-001; exon 1

  ENSMUST00000174851 ; Gm26940-001; exon 1

  ENSMUST00000083621 ; Mir219-1-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-219c

• mmu-mir-219a-1: chr17: 34024983-34025092 [-]
• mmu-mir-219c: chr17: 34025012-34025071 [+]

Database links

• MGI:Mir219c
• miRBase Tracker:MI0025034

Mature sequence mmu-miR-219c-5p

• Accession: MIMAT0029892
• Sequence: 1 - ggacguccagacgcaacucucg - 22
• Deep sequencing: 290 reads, 60 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-219c-5p
  • miRDB:mmu-miR-219c-5p

Mature sequence mmu-miR-219c-3p

• Accession: MIMAT0029893
• Sequence: 39 - cgagaauugcguuuggacaauc - 60
• Deep sequencing: 164 reads, 51 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-219c-3p
  • miRDB:mmu-miR-219c-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).