Stem-loop sequence mmu-mir-465d

Accession

MI0025028 (change log)

Symbol

MGI:Mir465d

Description

Mus musculus miR-465d stem-loop

Gene family

MIPF0000384; mir-465

Literature search

6 open access papers mention mmu-mir-465d
(27 sentences)

Stem-loop

   -         u  ua     g    gaaa 
5'  uauuuagaa gg  cugau ugau    u
    ||||||||| ||  ||||| ||||     
3'  augagucuu cc  gacua guua    a
   a         u  gg     -    aaaa 

Deep sequencing

107076 reads, 1.32e+03 reads per million, 53 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66822656-66822713 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-465d

• mmu-mir-465c-2: chrX: 66832517-66832597 [-]
• mmu-mir-465b-1: chrX: 66829202-66829280 [-]
• mmu-mir-465c-1: chrX: 66825955-66826035 [-]
• mmu-mir-465d: chrX: 66822656-66822713 [-]
• mmu-mir-470: chrX: 66813951-66814025 [-]

Database links

• MGI:Mir465d
• miRBase Tracker:MI0025028

Mature sequence mmu-miR-465d-5p

• Accession: MIMAT0029880
• Sequence: 1 - uauuuagaaugguacugauguga - 23
• Deep sequencing: 56893 reads, 42 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-465d-5p
  • miRDB:mmu-miR-465d-5p

Mature sequence mmu-miR-465d-3p

• Accession: MIMAT0029881
• Sequence: 37 - ugaucagggccuuucugaguaa - 58
• Deep sequencing: 50179 reads, 50 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-465d-3p
  • miRDB:mmu-miR-465d-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).