miRBase entry: tgu-mir-7645

Stem-loop tgu-mir-7645


Accession
MI0024982
Description
Taeniopygia guttata tgu-mir-7645 precursor miRNA

Literature search
1 open access papers mention tgu-mir-7645
(1 sentences)

Sequence

caggcguugaacaauaaacuucaauuccuuugcacccacaccgagaGUCCCCUUAAACCAAGCUCUGAgcaaauaaaguuUCGGGCUUGAUUUAAGAGGACUcuucgugcgc
.(((.((((((........)))))).))).........(((.((((((((.((((((.(((((((.((((.......)))).))))))).)))))).)))))))).)))...

Structure
caggcguugaacaauaaacuucaauuccuuugcaccca   c        C      C       U    aa 
                                      cac gagaGUCC CUUAAA CAAGCUC GAgc  a
                                      ||| |||||||| |||||| ||||||| ||||  u
                                      gug uucUCAGG GAAUUU GUUCGGG Uuug  a
-----------------------------------cgc   c        A      A       C    aa 


Annotation confidence Not enough data
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Genome context
chr20: 10603505-10603616 [+]

Database links

Mature tgu-miR-7645-5p

Accession MIMAT0029790
Description Taeniopygia guttata tgu-miR-7645-5p mature miRNA
Sequence 47 - GUCCCCUUAAACCAAGCUCUGA - 68
Evidence experimental
Illumina [1]

Mature tgu-miR-7645-3p

Accession MIMAT0029791
Description Taeniopygia guttata tgu-miR-7645-3p mature miRNA
Sequence 81 - UCGGGCUUGAUUUAAGAGGACU - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727