miRBase entry: cbn-mir-235

Stem-loop cbn-mir-235


Accession
MI0024941
Description
Caenorhabditis brenneri cbn-mir-235 precursor miRNA


Sequence

agguccuggcugacugcauauauugcucaacguuaaagaaugcuaaUAUUGCACUCGCCCCGGCCUGA
(((((..(((.((.((((.(((((((...............)).))))))))).)))))..)))))..

Structure
--     cu   u  c    u     -  ucaacg 
  agguc  ggc ga ugca auauu gc      u
  |||||  ||| || |||| ||||| ||      u
  UCCGG  CCG CU ACGU UAUaa cg      a
AG     CC   -  C    -     u  uaagaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Cbre_Contig98: 204892-204959 [+]

Database links

Mature cbn-miR-235

Accession MIMAT0029757
Description Caenorhabditis brenneri cbn-miR-235 mature miRNA
Sequence 47 - UAUUGCACUCGCCCCGGCCUGA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508