Stem-loop cbn-mir-239c-2

Accession

MI0024901

Description

Caenorhabditis brenneri cbn-mir-239c-2 precursor miRNA

Gene family

MIPF0000135; mir-239

Sequence

UUUGUACUAAACAUAGGUACUGAaauaaaauauuuuauuuacucaguuccuagucuagugcaaggg
(((((((((.((.((((.(((((((((((....))))))...))))).)))))).)))))))))..

Structure

--         A  A    U     ---      a 
  UUUGUACUA AC UAGG ACUGA   aauaaa u
  ||||||||| || |||| |||||   ||||||  
  gaacgugau ug aucc ugacu   uuauuu a
gg         c  -    u     cau      u 

Annotation confidence Not enough data

Genome context

Cbre_Contig91: 360758-360823 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbn-mir-239c-2

Mature cbn-miR-239c

• Accession: MIMAT0029729
• Description: Caenorhabditis brenneri cbn-miR-239c mature miRNA
• Sequence: 1 - UUUGUACUAAACAUAGGUACUGA - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508