miRBase entry: cbn-mir-239a

Stem-loop cbn-mir-239a


Accession
MI0024899
Description
Caenorhabditis brenneri cbn-mir-239a precursor miRNA
Gene family
MIPF0000135; mir-239


Sequence

UUUGUACUACACAUAGGUACUGGaaaacuuaccacagauuauccagugcuuggucuagugcaaga
(((((((((.((.(((((((((((.((((......)).)).))))))))))))).))))))))).

Structure
-         C  A           a  -  ua 
 UUUGUACUA AC UAGGUACUGGa aa cu  c
 ||||||||| || ||||||||||| || ||   
 gaacgugau ug guucgugaccu uu ga  c
a         c  -           a  a  ca 


Annotation confidence Not enough data
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Genome context
Cbre_Contig21: 125163-125227 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbn-mir-239a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-239a

Accession MIMAT0029728
Description Caenorhabditis brenneri cbn-miR-239a mature miRNA
Sequence 1 - UUUGUACUACACAUAGGUACUGG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508