miRBase entry: cbn-mir-238

Stem-loop cbn-mir-238


Accession
MI0024897
Description
Caenorhabditis brenneri cbn-mir-238 precursor miRNA


Sequence

uggaugugaucggguguaaaaagcuauccacgaagaaucgcUUUGUACUCCGAUGCCAUUCAGA
((((((..((((((.(((.(((((..((......))...))))).)))))))))..))))))..

Structure
--      ug      u   a     -ua  ca 
  uggaug  aucggg gua aaagc   uc  c
  ||||||  |||||| ||| |||||   ||   
  ACUUAC  UAGCCU CAU UUUcg   ag  g
AG      CG      -   G     cua  aa 


Annotation confidence Not enough data
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Genome context
Cbre_Contig7: 1125977-1126040 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cbn-mir-238
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-238

Accession MIMAT0029726
Description Caenorhabditis brenneri cbn-miR-238 mature miRNA
Sequence 42 - UUUGUACUCCGAUGCCAUUCAGA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508