miRBase entry: cbn-mir-44-1

Stem-loop cbn-mir-44-1

Accession

MI0024874

Description

Caenorhabditis brenneri cbn-mir-44-1 precursor miRNA

Gene family

MIPF0000132; mir-44

Sequence

cuggaugugcucguuagucauaguagccuauccugaacggccuaUGACUAGAGACACAUUCAGCU
(((((((((.((.((((((((((..(((..........))))))))))))).)))))))))))..

Structure

--         c  g          ua   uauc 
  cuggaugug uc uuagucauag  gcc    c
  ||||||||| || ||||||||||  |||     
  GACUUACAC AG GAUCAGUauc  cgg    u
UC         -  A          --   caag

Annotation confidence Not enough data

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Genome context

Cbre_Contig144: 111603-111667 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-44-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-44

Accession	MIMAT0029711
Description	Caenorhabditis brenneri cbn-miR-44 mature miRNA
Sequence	45 - UGACUAGAGACACAUUCAGCU - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508