miRBase entry: cbn-mir-64h-2

Stem-loop cbn-mir-64h-2


Accession
MI0024870
Description
Caenorhabditis brenneri cbn-mir-64h-2 precursor miRNA
Gene family
MIPF0000295; mir-64


Sequence

AAUGACAAUUAAUCGCAAUUGGAccauccgaacucuaagggcuccgauugcguuaguuggcauag
.(((.(((((((.((((((((((...(((.........))).))))))))))))))))).)))..

Structure
-A   A       U          cca   gaa 
  AUG CAAUUAA CGCAAUUGGA   ucc   c
  ||| ||||||| ||||||||||   |||   u
  uac guugauu gcguuagccu   ggg   c
ga   g       -          --c   aau 


Annotation confidence Not enough data
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Genome context
Cbre_Contig230: 83652-83716 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from cbn-mir-64h-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-64h

Accession MIMAT0029701
Description Caenorhabditis brenneri cbn-miR-64h mature miRNA
Sequence 1 - AAUGACAAUUAAUCGCAAUUGGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508