miRBase entry: cbn-mir-64a-5

Stem-loop cbn-mir-64a-5


Accession
MI0024869
Description
Caenorhabditis brenneri cbn-mir-64a-5 precursor miRNA
Gene family
MIPF0000295; mir-64


Sequence

UAUGACACUUAAGCAUAGGUGGAccauucaagaccauaggauccagcuacgcuaaguggaauagu
(((..((((((.((.(((.((((((.............)).)))).))).))))))))..)))..

Structure
--   GA      A  A   G    -  auuca 
  UAU  CACUUA GC UAG UGGA cc     a
  |||  |||||| || ||| |||| ||     g
  aua  gugaau cg auc accu gg     a
ug   ag      -  c   g    a  auacc 


Annotation confidence Not enough data
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Genome context
Cbre_Contig274: 39182-39246 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from cbn-mir-64a-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-64a

Accession MIMAT0029702
Description Caenorhabditis brenneri cbn-miR-64a mature miRNA
Sequence 1 - UAUGACACUUAAGCAUAGGUGGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508