miRBase entry: cbn-mir-64d-2

Stem-loop cbn-mir-64d-2


Accession
MI0024868
Description
Caenorhabditis brenneri cbn-mir-64d-2 precursor miRNA
Gene family
MIPF0000295; mir-64


Sequence

UAUGACACAUAAGCGUAGUUGGAccauccaagaacauaggauccaaccaugauaugugugauagu
(((.(((((((..(((.((((((...(((.........))))))))).))).))))))).)))..

Structure
--   G       AG   A      cca   aag 
  UAU ACACAUA  CGU GUUGGA   ucc   a
  ||| |||||||  ||| ||||||   |||   a
  aua uguguau  gua caaccu   agg   c
ug   g       -a   c      ---   aua 


Annotation confidence Not enough data
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Genome context
Cbre_Contig230: 83908-83972 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from cbn-mir-64d-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-64d

Accession MIMAT0029703
Description Caenorhabditis brenneri cbn-miR-64d mature miRNA
Sequence 1 - UAUGACACAUAAGCGUAGUUGGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508