miRBase entry: cbn-mir-64i-1

Stem-loop cbn-mir-64i-1


Accession
MI0024858
Description
Caenorhabditis brenneri cbn-mir-64i-1 precursor miRNA
Gene family
MIPF0000295; mir-64


Sequence

UAUGACACGGAUCAAUGCUUGACguugauuuaaaucaaauaaaaucaaucauuguucguggcaugcc
((((.((((((.(((((.((((..(((((....)))))......)))).))))))))))).))))..

Structure
--    A      U     C    ----Cg     u 
  UAUG CACGGA CAAUG UUGA      uugau u
  |||| |||||| ||||| ||||      |||||  
  guac gugcuu guuac aacu      aacua a
cc    g      -     u    aaaaua     a 


Annotation confidence Not enough data
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Genome context
Cbre_Contig230: 84693-84759 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from cbn-mir-64i-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbn-miR-64i

Accession MIMAT0029706
Description Caenorhabditis brenneri cbn-miR-64i mature miRNA
Sequence 1 - UAUGACACGGAUCAAUGCUUGAC - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508