Stem-loop cbn-mir-80

Accession

MI0024840

Description

Caenorhabditis brenneri cbn-mir-80 precursor miRNA

Gene family

MIPF0000258; mir-80

Sequence

agcuuucgacaugguucugaacaauacgcauugcauauguuguUGAGAUCAUUAGUUGAAAGCCGA
.((((((((((((((.((.(((((((.((...))...))))))).)))))))..)))))))))...

Structure

--a         --     u  g       --c  a 
   gcuuucgac  auggu cu aacaaua   gc  
   |||||||||  ||||| || |||||||   || u
   CGAAAGUUG  UACUA GA Uuguugu   cg  
AGC         AU     -  G       aua  u 

Annotation confidence Not enough data

Genome context

Cbre_Contig7: 1123795-1123860 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-80

Mature cbn-miR-80

• Accession: MIMAT0029691
• Description: Caenorhabditis brenneri cbn-miR-80 mature miRNA
• Sequence: 44 - UGAGAUCAUUAGUUGAAAGCCGA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508