miRBase entry: cbn-mir-51-1

Stem-loop cbn-mir-51-1

Accession

MI0024838

Description

Caenorhabditis brenneri cbn-mir-51-1 precursor miRNA

Gene family

MIPF0000268; mir-51

Sequence

UACCCGUAGCUCCUAUCCAUGUUguuaucaaagaagucaacauggaaguugguaccggugca
((((.(((.(..((.(((((((((...((...))...)))))))))))..).))).))))..

Structure

--    C   G UC  A         uua  a 
  UACC GUA C  CU UCCAUGUUg   uc  
  |||| ||| |  || |||||||||   || a
  gugg cau g  ga agguacaac   ag  
ac    c   g uu  -         uga  a

Annotation confidence Not enough data

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Genome context

Cbre_Contig147: 149716-149777 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-51-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-51

Accession	MIMAT0029690
Description	Caenorhabditis brenneri cbn-miR-51 mature miRNA
Sequence	1 - UACCCGUAGCUCCUAUCCAUGUU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508