Stem-loop cbn-mir-56

Accession

MI0024837

Description

Caenorhabditis brenneri cbn-mir-56 precursor miRNA

Sequence

cggccgauacauuucugguguaccucaaaacugauggUACCCGUAAUGUUUCCGCCGAG
((((.((.(((((..(((.((((((((....))).)))))))).))))).)).))))..

Structure

--    c  u     uc   u     -   a 
  cggc ga acauu  ugg guacc uca a
  |||| || |||||  ||| ||||| |||  
  GCCG CU UGUAA  GCC CAUgg agu a
GA    C  U     -U   -     u   c 

Annotation confidence Not enough data

Genome context

Cbre_Contig2: 2465487-2465545 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-56

Mature cbn-miR-56

• Accession: MIMAT0029689
• Description: Caenorhabditis brenneri cbn-miR-56 mature miRNA
• Sequence: 38 - UACCCGUAAUGUUUCCGCCGAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508