Stem-loop cbn-mir-54

Accession

MI0024835

Description

Caenorhabditis brenneri cbn-mir-54 precursor miRNA

Gene family

MIPF0000874; mir-54

Sequence

gggauaugagaggacgaguacauugaauucaaccauuacuugUACCCGUAAUCUUCAUAAUCCGAG
.((((((((((..(((.(((((...(((......)))...))))).)))..)).)))).))))...

Structure

--g    -    -  gg   a     uug   uc 
   ggau auga ga  acg guaca   aau  a
   |||| |||| ||  ||| |||||   |||   
   CCUA UACU CU  UGC CAUgu   uua  a
GAG    A    U  AA   C     uca   cc 

Annotation confidence Not enough data

Genome context

Cbre_Contig2: 2465213-2465278 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-54

Mature cbn-miR-54

• Accession: MIMAT0029687
• Description: Caenorhabditis brenneri cbn-miR-54 mature miRNA
• Sequence: 43 - UACCCGUAAUCUUCAUAAUCCGAG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508