miRBase entry: crm-mir-54

Stem-loop crm-mir-54


Accession
MI0024762
Description
Caenorhabditis remanei crm-mir-54 precursor miRNA

Literature search
1 open access papers mention crm-mir-54
(1 sentences)

Sequence

GGGAUAUGAAAUCACGUGAACAgcguucugaguacaugucuguacccguaaucuucauaauccaag
(((.((((((((.(((.(.(((((((.........))).)))).).))).)).)))))).)))...

Structure
---   A      -  C   U A    -   ucu 
   GGG UAUGAA AU ACG G ACAg cgu   g
   ||| |||||| || ||| | |||| |||   a
   ccu auacuu ua ugc c uguc gua   g
gaa   a      c  a   c a    u   cau 


Annotation confidence Not enough data
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Genome context
Crem_Contig43: 489070-489135 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from crm-mir-54
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-54

Accession MIMAT0029623
Description Caenorhabditis remanei crm-miR-54 mature miRNA
Sequence 1 - GGGAUAUGAAAUCACGUGAACA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508