miRBase entry: ipu-mir-16c

Stem-loop ipu-mir-16c


Accession
MI0024674
Description
Ictalurus punctatus ipu-mir-16c precursor miRNA

Literature search
1 open access papers mention ipu-mir-16c
(1 sentences)

Sequence

CCAGCAGCACGGUCAAUACUGgaggauucgcaagugcuuugacuccaauauuuacgugcugcuacag
..(((((((((...((((.(((((.....((....)).....))))).))))..)))))))))....

Structure
--CC         GUC    C     gauuc  a 
    AGCAGCACG   AAUA UGgag     gc a
    |||||||||   |||| |||||     ||  
    ucgucgugc   uuau accuc     cg g
gaca         -au    a     aguuu  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-16c

Accession MIMAT0029538
Description Ictalurus punctatus ipu-miR-16c mature miRNA
Sequence 1 - CCAGCAGCACGGUCAAUACUG - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174