miRBase entry: lja-MIR7546

Stem-loop lja-MIR7546


Accession
MI0024432
Description
Lotus japonicus lja-MIR7546 precursor miRNA


Sequence

cguggcacgcccuggUUGGUGACCGACAGGCGCGUGCcacacacgcgccgacaaggcgcguaacguggcagguuggcugcgugugggacccaguggcuccggaagugggacgcguggcacgcccugguugggcaccgacaggcgcgugccacg
((((((((((((((.((((((.((((((((.(((((((((((((((((((((..(.((((...)))).)..)))))).))))))(.(.((((.(..(....).).)))).).))))))))))))).))))).)))))))))).))))))))))

Structure
          -    g      A     -   C         -----------------------------      -      aa g    u 
cguggcacgc ccug UUGGUG CCGAC AGG GCGUGCcac                             acacgc gccgac  g cgcg  
|||||||||| |||| |||||| ||||| ||| |||||||||                             |||||| ||||||  | |||| a
gcaccgugcg ggac agccac gguug ucc cgcacggug                             ugugcg cgguug  c gugc  
          c    -      g     g   -         cgcagggugaaggccucggugacccaggg      u      ga g    a 


Annotation confidence Not enough data
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Genome context
Chr2: 27501460-27501612 [-]

Database links

Mature lja-miR7546

Accession MIMAT0029373
Description Lotus japonicus lja-miR7546 mature miRNA
Sequence 16 - UUGGUGACCGACAGGCGCGUGC - 37
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154