miRBase entry: lja-MIR7543

Stem-loop lja-MIR7543


Accession
MI0024429
Description
Lotus japonicus lja-MIR7543 precursor miRNA


Sequence

gauuucuuugggguuUUAAUGAUACAUGUUUGACUcccuuaaacaaggucucaucgagucuuguguaugguaaaaacaccugcuugggguu
((((((...((((((((.((.(((((((...(((((((((....)))).......))))).))))))).)).))))).)))....))))))

Structure
      -uuu   -     A  G       UUU     -------    a 
gauuuc    ggg guuUU AU AUACAUG   GACUc       ccuu a
||||||    ||| ||||| || |||||||   |||||       ||||  
uugggg    ucc caaaa ug uaugugu   cugag       ggaa a
      uucg   a     a  g       --u     cuacucu    c 


Annotation confidence Not enough data
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Genome context
Chr6: 21817956-21818046 [+]

Database links

Mature lja-miR7543

Accession MIMAT0029370
Description Lotus japonicus lja-miR7543 mature miRNA
Sequence 16 - UUAAUGAUACAUGUUUGACU - 35
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154