miRBase entry: lja-MIR7542

Stem-loop lja-MIR7542


Accession
MI0024428
Description
Lotus japonicus lja-MIR7542 precursor miRNA


Sequence

gUGCUUGCUUAUAGAUGGUGugauccaucacauauuguucaguguguucaauuuggcugucaauaugauuuccuuuuuuauuuucuuugcuuuugcugcggaguugugagauuccauauugucuaugaguguuguac
((((.(((((((((((((((((........(((((((..((((............)))).)))))))........((((((...((((((.......))))))..))))))...)))))))))))))))))..))))

Structure
    -U                 auccaucacauauuguucaguguguucaauuuggcugucaauaugauuuccuu      uuu      uu 
gUGC  UGCUUAUAGAUGGUGug                                                     uuuuau   cuuugc  u
||||  |||||||||||||||||                                                     ||||||   ||||||  u
caug  gugaguaucuguuauac                                                     agagug   gaggcg  g
    uu                 --------------------------------------------------cuu      -uu      uc 


Annotation confidence Not enough data
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Genome context
Chr6: 19292878-19293014 [-]

Database links

Mature lja-miR7542

Accession MIMAT0029369
Description Lotus japonicus lja-miR7542 mature miRNA
Sequence 2 - UGCUUGCUUAUAGAUGGUG - 20
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154