Stem-loop lja-MIR7533b

Accession

MI0024417

Description

Lotus japonicus lja-MIR7533b precursor miRNA

Gene family

MIPF0001834; MIR7533

Sequence

gaauuuggaucaucuccauccagcuucucuccauccccucuccauccaaaaucugagccguugauuaggaauuuuaaaugugaggauuaauucauguuuucucucucuucuuaaauugauccaagccuuuaaauacaauucauuuuuuucucuuucuucucaaauugauccccaccuuuaaaauuuaaaauuaaugacucaaauuuuggauggaGAGGGGAUGGAGAGAAGCUGGauggagaggauccaaaucc
..(((((((((.((((((((((((((((((((((((((((((((((((((((.((((.((((((((..((((((((((.(((.(((((((((..((................(((.(((....................))).)))..............))))))))))).))).))))))))))..)))))))).)))).)))))))))))))))))))))))))))))))))))))))).)))))))))..

Structure

ga         a                                        c    c        ag          u   a         ca  uuuucucucucuucuu   u   uccaagccu 
  auuuggauc ucuccauccagcuucucuccauccccucuccauccaaaau ugag cguugauu  gaauuuuaaa gug ggauuaauu  ug                aaa uga         u
  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||||| ||| |||||||||  ||                ||| |||          
  uaaaccuag agagguaGGUCGAAGAGAGGUAGGGGAGagguagguuuua acuc guaauuaa  uuuaaaauuu cac ccuaguuaa  ac                uuu acu         u
cc         g                                        a    a        aa          c   c         --  --ucuucuuucucuuu   u   uaacauaaa 

Annotation confidence Not enough data

Genome context

Chr5: 8836063-8836316 [-]

Mature lja-miR7533b

• Accession: MIMAT0029358
• Description: Lotus japonicus lja-miR7533b mature miRNA
• Sequence: 215 - GAGGGGAUGGAGAGAAGCUGG - 235
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154