Stem-loop lja-MIR7532a

Accession

MI0024414

Description

Lotus japonicus lja-MIR7532a precursor miRNA

Gene family

MIPF0001820; MIR7532

Sequence

cgggucgcauugguucugGAAGCUGCCUCUGGUCGUGGUuggcucgguggucggcgcgcuacuucucgaccgagaaguucggagcaucuaccgaugcguguucccggcaccggaggcucagccacaggugcaugcggcaccg
((((((((((....((((...(((((((((((((..((...(((((((((...((.(...(((((((....)))))))...).))..))))))).)).....))..).)))))))))..)))..))))...))))))).)))

Structure

   -       uggu    GAA   --         - GU  --Uug  -       ucg  g gcu       g 
cgg gucgcau    ucug   GCU  GCCUCUGGU C  GG     gc ucggugg   gc c   acuucuc a
||| |||||||    ||||   |||  ||||||||| |  ||     || |||||||   || |   |||||||  
gcc cggcgua    ggac   cga  cggaggcca g  cc     cg agccauc   cg g   ugaagag c
   a       -cgu    -ac   cu         c gc  uugug  u       -ua  a gcu       c 

Annotation confidence Not enough data

Genome context

Chr1: 1350080-1350221 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR7532a

Mature lja-miR7532a

• Accession: MIMAT0029355
• Description: Lotus japonicus lja-miR7532a mature miRNA
• Sequence: 19 - GAAGCUGCCUCUGGUCGUGGU - 39
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154