Stem-loop lja-MIR7530

Accession

MI0024412

Description

Lotus japonicus lja-MIR7530 precursor miRNA

Sequence

uaaucaaacccucuccuCCUUCCUCUCUUCACUAUCUUCuuccaaacacggccgaccuuccucuuccuccaaccagccgccaccuucuaacugaucccuggcgagaugguagugcgauggaggucucaacggcgcggcgagauggcaaggcucacgguagugcguugguugcaacagugaagagcgacggcgcguggaagaggaggacggcagaagggaaggucagguuagcuuggguuugauug
(((((((((((.((((((((((((.(((...((.((((((((....((((((((....((((((((((.(((((((((((.(((.......(((..(((.((.(..(.((.((((....((....))....)))).)).)..).)).))).))).))).))).))))))))....)).)))))).)))))).))))...)))))))).)).))).)))))))..)))..))...)))))))))))

Structure

           --u  --   --       C   UCA  A        caaa    -    accu  -      -  ---c        -   c   uucuaac   uc   g  g ga g  a    gaug  g 
uaaucaaaccc   cu  ccu  CCUUCCU UCU   CU UCUUCuuc    cacg gccg    uc cucuuc cu    caaccagc cgc acc       uga  ccu gc a  u gu gugc    ga g
|||||||||||   ||  |||  ||||||| |||   || ||||||||    |||| ||||    || |||||| ||    |||||||| ||| |||       |||  ||| || |  | || ||||    ||  
guuaguuuggg   ga  gga  ggaaggg aga   gg aggaggag    gugc cggc    ag gagaag ga    guugguug gug ugg       acu  gga cg u  a cg cgcg    cu u
           uuc  uu   cu       a   --c  c        -aag    g    ----  c      u  caac        c   a   ------c   -c   a  g ag g  g    gcaa  c 

Annotation confidence Not enough data

Genome context

Chr3: 4462027-4462271 [+]

Mature lja-miR7530

• Accession: MIMAT0029353
• Description: Lotus japonicus lja-miR7530 mature miRNA
• Sequence: 18 - CCUUCCUCUCUUCACUAUCUUC - 39
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154