Stem-loop lja-MIR7528

Accession

MI0024410

Description

Lotus japonicus lja-MIR7528 precursor miRNA

Sequence

gagaaaggaagugaauugaguugaauugaauuuugaaguggaguugcugaugaugagagcauuauuggcaugagcugcgacaacauuuuugcgcaccguguuguuuuucagacagacauggguuguuguugcuaugaagaaugugCCGAAAUGCUAAUCUGAAGCUUucugucuucacauuagauuguuguucuuugugugauauuugcuuacuu
(((.(((.(((((.........((((.....(((((.((((((..(((...(((...((((((.((((((((..(((((((((((.......((.(((((((((((...))))).))))))))))))))))).....))..)))))))))))))).)))...))).......)))))).))))).....)))).........))))).))).)))

Structure

   a   g     aauugaguu    ugaau     a      -----uu   gau   gag      a        ag  -----         uuuuugc  a      -     u 
gag aag aagug         gaau     uuuga guggag       gcu   gau   agcauu uuggcaug  cu     gcgacaaca       gc ccgugu uguuu  
||| ||| |||||         ||||     ||||| ||||||       |||   |||   |||||| ||||||||  ||     |||||||||       || |||||| ||||| u
uuc uuc uuuau         cuug     agauu cacuuc       CGA   CUA   UCGUAA AGCCgugu  ga     cguuguugu       ug gguaca acaga  
   a   g     aguguguuu    uuguu     a      ugucuUU   AGU   --A      -        aa  aguau         -------  -      g     c 

Annotation confidence Not enough data

Genome context

Chr1: 61468270-61468484 [-]

Mature lja-miR7528

• Accession: MIMAT0029351
• Description: Lotus japonicus lja-miR7528 mature miRNA
• Sequence: 146 - CCGAAAUGCUAAUCUGAAGCUU - 167
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154