Stem-loop lja-MIR7523a

Accession

MI0024397

Description

Lotus japonicus lja-MIR7523a precursor miRNA

Gene family

MIPF0001808; MIR7523

Sequence

ccaccggguccucugacagcuccgcacccaucaucACCACCGGGCUCGAGGAUCAGCcuaaccugaagcugcaaaucucugacauugagugguuuuugggccucgacaaugagccaguccaggcccaagcccagauccaggcccaggcugagccucugccugguggugaugcugagugggagagcgauuucauggaccugugg
((((.((((((..(((..(((((.(((.((.((((((((((((((..((((.(((((((..((((...(((.....(((.......))).(((..((((((((.(((.........))).))))))))))))))...))))...))))))).)))).)))))))))))))).)).))).).))))....))).))))))))))

Structure

    c      uc   --ca    - g   c  u              UC    A       -aa    aag   caaaucucugacauugagu   uu        c   aau 
ccac gggucc  uga    gcuc c cac ca caucACCACCGGGC  GAGG UCAGCcu   ccug   cug                   ggu  uugggccu gac   g
|||| ||||||  |||    |||| | ||| || ||||||||||||||  |||| |||||||   ||||   |||                   |||  |||||||| |||   a
ggug uccagg  acu    cgag g gug gu guaguggugguccg  cucc agucgga   ggac   gac                   ccg  aacccgga cug   g
    -      -u   uuag    a g   a  c              -u    g       ccc    cua   -------------------   --        c   acc 

Annotation confidence Not enough data

Genome context

Chr1: 25737508-25737710 [+]

Mature lja-miR7523a

• Accession: MIMAT0029338
• Description: Lotus japonicus lja-miR7523a mature miRNA
• Sequence: 36 - ACCACCGGGCUCGAGGAUCAGC - 57
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 23071252
   Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
   "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
   "Plant Physiol (2012) 160:2137-2154