Stem-loop sequence lja-MIR1507b

Accession

MI0024390 (change log)

Description

Lotus japonicus miR1507b stem-loop

Gene family

MIPF0000699; MIR1507

Literature search

1 open access papers mention lja-MIR1507b
(6 sentences)

Stem-loop

        aau     g    -         c     a         g u    ug u 
5' aaggc   guuug uaga gguguaugg uggaa aaagaaaag c ucuc  g c
   |||||   ||||| |||| ||||||||| ||||| ||||||||| | ||||  |  
3' uuuug   caaac aucu cuacauacc accuu uuucuuuuc g agag  u a
        agu     a    a         u     c         - u    gu u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (lj2.5): Chr6: 14519223-14519332 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024390

Mature sequence lja-miR1507b

• Accession: MIMAT0029331
• Sequence: 75 - ucuuccauccauacaucaucu - 95
• Evidence: experimental; cloned [1], Northern [1]

References

1. PMID:23071252 "Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus" De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O Plant Physiol. 160:2137-2154(2012).