miRBase entry: lja-MIR167c

Stem-loop lja-MIR167c


Accession
MI0024376
Description
Lotus japonicus lja-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1


Sequence

ggucacaauggaaauagUGAAGCUGCCAGCAUGAUCUagcuuugguuagugagaggagcaacagaucaaugcuaacccucacuaggucaugcugugcuagccucacuccuuccuauuuggagacc
((((.(((.((((..(((((.((((((((((((((((((....((((((((....((........))..))))))))....))))))))))))).)).))).)))))..))))...)))..))))

Structure
    -a   --u    au     A   -  -             cuuu        agag  gca 
gguc  caa   ggaa  agUGA GCU GC CAGCAUGAUCUag    gguuagug    ga   a
||||  |||   ||||  ||||| ||| || |||||||||||||    ||||||||    ||    
ccag  guu   ccuu  ucacu cga cg gucguacuggauc    ccaaucgu    cu   c
    ag   uau    cc     c   u  u             acuc        --aa  aga 


Annotation confidence Not enough data
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Genome context
Chr5: 18177341-18177465 [+]

Database links

Mature lja-miR167c

Accession MIMAT0029313
Description Lotus japonicus lja-miR167c mature miRNA
Sequence 18 - UGAAGCUGCCAGCAUGAUCU - 37
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 23071252
    Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
    "De Luis A, Markmann K, Cognat V, Holt DB, Charpentier M, Parniske M, Stougaard J, Voinnet O"
    "Plant Physiol (2012) 160:2137-2154