miRBase entry: sly-MIR168b

Stem-loop sly-MIR168b


Accession
MI0024353
Description
Solanum lycopersicum sly-MIR168b precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
19 open access papers mention sly-MIR168b
(65 sentences)

Sequence

uugcggugguuucucauUCGCUUGGUGCAGGUCGGGACcuaccucgccggcaacaauggcgguagcugacggcgacggcagcguaccgguaaaaaagaaucuuauuuuuacauguuguugcguaguuuggguCCCGCCUUGCAUCAACUGAAUaggagacugcgguga
((((.(((((((((.(((((.((((((((((.(((((((((.(((((.(((((((....(((((((((.((....)).)))).)))))(((((((.........))))))).)))))))))).))..))))))))).)))))))))).))))).))))))))).))))

Structure
    g         c     C          U         -c  -   c       --------------------augg     -    a  g 
uugc gugguuucu auUCG UUGGUGCAGG CGGGACcua  cu cgc ggcaaca                        cggua gcug cg c
|||| ||||||||| ||||| |||||||||| |||||||||  || ||| |||||||                        ||||| |||| ||  
agug cgucagagg UAAGU AACUACGUUC GCCCugggu  ga gcg uuguugu                        gccau cgac gc g
    g         a     C          C         uu  u   -       acauuuuuauucuaagaaaaaaug     g    g  a 


Annotation confidence Not enough data
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Genome context
chr12: 65227958-65228125 [+]

Database links

Mature sly-miR168b-5p

Accession MIMAT0031131
Description Solanum lycopersicum sly-miR168b-5p mature miRNA
Sequence 18 - UCGCUUGGUGCAGGUCGGGAC - 38
Evidence experimental
Illumina [1]

Mature sly-miR168b-3p

Accession MIMAT0031132
Description Solanum lycopersicum sly-miR168b-3p mature miRNA
Sequence 133 - CCCGCCUUGCAUCAACUGAAU - 153
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23080016
    The developmental outcomes of P0-mediated ARGONAUTE destabilization in tomato
    "Hendelman A, Kravchik M, Stav R, Zik M, Lugassi N, Arazi T"
    "Planta (2013) 237:363-377