Stem-loop sly-MIR168a

Accession

MI0024352

Description

Solanum lycopersicum sly-MIR168a precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

20 open access papers mention sly-MIR168a
(70 sentences)

Sequence

cucuuauUCGCUUGGUGCAGGUCGGGACcucauucgccggcgccgggaauaaugccggacgaacgacggcgguguuaauucuacuaaagcugucaccgacggauagauguuugauuagcggcgaaauuuggguCCUGCCUUGCAUCAACUGAAUuggag
((((.(((((.((((((((((.((((((((..(((((((.((((((........)))).))...((((((...((.......))....))))))...((((......)))).......)))))))....)))))))).)))))))))).))))).))))

Structure

    u     C          U        --ca       gcgccgggaauaaugccggacgaac      -ggu  ua 
cucu auUCG UUGGUGCAGG CGGGACcu    uucgccg                         gacggc    gu  a
|||| ||||| |||||||||| ||||||||    |||||||                         ||||||    ||  u
gagg UAAGU AACUACGUUC GUCCuggg    aagcggc                         cugucg    ca  u
    u     C          C        uuua       -gauuaguuuguagauaggcagcca      aaau  uc 

Annotation confidence Not enough data

Genome context

chr8: 558753-558911 [+]

Mature sly-miR168a-5p

• Accession: MIMAT0031129
• Description: Solanum lycopersicum sly-miR168a-5p mature miRNA
• Sequence: 8 - UCGCUUGGUGCAGGUCGGGAC - 28
• Evidence: experimental ; Illumina [1]

Mature sly-miR168a-3p

• Accession: MIMAT0031130
• Description: Solanum lycopersicum sly-miR168a-3p mature miRNA
• Sequence: 134 - CCUGCCUUGCAUCAACUGAAU - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23080016
   The developmental outcomes of P0-mediated ARGONAUTE destabilization in tomato
   "Hendelman A, Kravchik M, Stav R, Zik M, Lugassi N, Arazi T"
   "Planta (2013) 237:363-377