Stem-loop mes-MIR535b

Accession

MI0024343

Description

Manihot esculenta mes-MIR535b precursor miRNA

Gene family

MIPF0000136; MIR535

Literature search

4 open access papers mention mes-MIR535b
(9 sentences)

Sequence

gcuuugacaucauucguUGACAACGAGAGAGAGCACGGuugucagcauuucaugcaagggacaugacuguuuacaagcgugcugucuaucguugucauaagaagugcucagagc
((((((((((..(((..(((((((((.(((.((((((.((((.((((..((((((....).))))).)))).)))).)))))).))).)))))))))...)))))).)))))))

Structure

       -   ca   -gu         G   G      G    c    uu     - a 
gcuuuga cau  uuc   UGACAACGA AGA AGCACG uugu agca  ucaug c a
||||||| |||  |||   ||||||||| ||| |||||| |||| ||||  ||||| |  
cgagacu gug  aag   acuguugcu ucu ucgugc aaca uugu  aguac g g
       c   --   aau         a   g      g    u    -c     a g 

Annotation confidence Not enough data

Genome context

scaffold01190: 166527-166640 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR535b

Mature mes-miR535b

• Accession: MIMAT0029301
• Description: Manihot esculenta mes-miR535b mature miRNA
• Sequence: 18 - UGACAACGAGAGAGAGCACGG - 38
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269