miRBase entry: mes-MIR396a

Stem-loop mes-MIR396a


Accession
MI0024315
Description
Manihot esculenta mes-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
4 open access papers mention mes-MIR396a
(15 sentences)

Sequence

uggcccucuucguauucUUCCACAGCUUUCUUGAACUGcaucucuacaacgaagcuugugguuauugcaugccacggcucgccaauuaagcggcuucuuguuuucuuguuuuguugcgguucaauaaagcugugggaagauacugacaggguca
(((((((.((.(((((.((((((((((((.((((((((((.(...((((.(((((..(((((........)))))(((.(((.......))))))....))))).))))...).)))))))))).)))))))))))).))))).)).)))))))

Structure
       c  c     c            C          u ucu    c     uugugguuauugcaugccac   u   ca 
uggcccu uu guauu UUCCACAGCUUU UUGAACUGca c   acaa gaagc                    ggc cgc  a
||||||| || ||||| |||||||||||| |||||||||| |   |||| |||||                    ||| |||  u
acuggga ag cauag agggugucgaaa aacuuggcgu g   uguu uuuug                    ucg gcg  u
       c  u     a            u          u uuu    c     ----------------uucu   -   aa 


Annotation confidence Not enough data
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Genome context
scaffold05760: 81136-81289 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR396a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR396a

Accession MIMAT0029273
Description Manihot esculenta mes-miR396a mature miRNA
Sequence 18 - UUCCACAGCUUUCUUGAACUG - 38
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269