miRBase entry: mes-MIR395b

Stem-loop mes-MIR395b


Accession
MI0024311
Description
Manihot esculenta mes-MIR395b precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention mes-MIR395b
(11 sentences)

Sequence

gaguucccuugaccacuucauuggggcuauauacucuacuacucccaCUGAAGUGUUUGGGGGAACUC
((((((((((((.(((((((.(((((................))))).))))))).))))))))))))

Structure
            c       u     cuauaua 
gaguucccuuga cacuuca ugggg       c
|||||||||||| ||||||| |||||        
CUCAAGGGGGUU GUGAAGU acccu       u
            U       C     caucauc 


Annotation confidence Not enough data
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Genome context
scaffold11495: 417324-417391 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR395b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR395b

Accession MIMAT0029269
Description Manihot esculenta mes-miR395b mature miRNA
Sequence 48 - CUGAAGUGUUUGGGGGAACUC - 68
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269