miRBase entry: mes-MIR395a

Stem-loop mes-MIR395a


Accession
MI0024310
Description
Manihot esculenta mes-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention mes-MIR395a
(11 sentences)

Sequence

gaguuccccugagcacuucauugggagcccuuaauauacuuuugucuuccaaCUGAAGUGUUUGGGGGAACUC
((((((((((((((((((((((((((((...............).))))))).))))))))))))))))))))

Structure
                    -       - ccuuaa 
gaguuccccugagcacuuca uugggag c      u
|||||||||||||||||||| ||||||| |      a
CUCAAGGGGGUUUGUGAAGU aaccuuc g      u
                    C       u uuuuca 


Annotation confidence Not enough data
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Genome context
scaffold11495: 409809-409881 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR395a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR395a

Accession MIMAT0029268
Description Manihot esculenta mes-miR395a mature miRNA
Sequence 53 - CUGAAGUGUUUGGGGGAACUC - 73
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269