miRBase entry: mes-MIR393d

Stem-loop mes-MIR393d


Accession
MI0024307
Description
Manihot esculenta mes-MIR393d precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
4 open access papers mention mes-MIR393d
(18 sentences)

Sequence

ugauuaguuagugcaggcggaggguUCCAAAGGGAUCGCAUUGAUCUacugauuccuccauuaaaugaguuaaaauucucacuuuuuuauucauuggaucaugcgaucccuuaggaauucuccaccuauagcucuaaauuca
(((....((((.(((((.((((((((((.((((((((((((.((((((.(((..........((.((((........)))).))......))).)))))))))))))))))).)))))))))).)))...)).))))..)))

Structure
   uuag    u  ---   c          A            U      c   uuccuccauu  a    uua 
uga    uuag gc   agg ggaggguUCC AAGGGAUCGCAU GAUCUa uga          aa ugag   a
|||    |||| ||   ||| |||||||||| |||||||||||| |||||| |||          || ||||    
acu    aauc cg   ucc ccucuuaagg uucccuagcgua cuaggu acu          uu acuc   a
   --ua    u  aua   a          a            -      u   ----uauuuu  c    uua 


Annotation confidence Not enough data
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Genome context
scaffold00341: 615432-615573 [+]

Database links

Mature mes-miR393d

Accession MIMAT0029265
Description Manihot esculenta mes-miR393d mature miRNA
Sequence 26 - UCCAAAGGGAUCGCAUUGAUCU - 47
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269