miRBase entry: mes-MIR169ac

Stem-loop mes-MIR169ac


Accession
MI0024279
Description
Manihot esculenta mes-MIR169ac precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169ac
(28 sentences)

Sequence

guuugaUAGCCAAGGAUGACUUGCCUaucuccuccaacaggguuucaaacagaugaauaaugcagaagaaugcggugggauuaaucuggauuuggagcucuuuuguggcucauaggcagucuccuucggcuagucugac
(((.((((((((((((.((((.((((((..((..(((.((((((((((((((((.(((..((((......)))).....))).)))))..))))))))))).))).))...))))))))))))))).)))).))).)))

Structure
   u   -    -     U    U      -cu  uc   c           --     g   ---aa    ga 
guu gaU AGCC AAGGA GACU GCCUau   cc  caa aggguuucaaa  cagau aau     ugca  a
||| ||| |||| ||||| |||| ||||||   ||  ||| |||||||||||  ||||| |||     ||||   
cag cug ucgg uuccu cuga cggaua   gg  guu ucucgagguuu  gucua uua     gcgu  g
   u   a    c     -    -      cuc  -u   u           ag     a   gggug    aa 


Annotation confidence Not enough data
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Genome context
scaffold01701: 436630-436768 [+]

Database links

Mature mes-miR169ac

Accession MIMAT0029237
Description Manihot esculenta mes-miR169ac mature miRNA
Sequence 7 - UAGCCAAGGAUGACUUGCCU - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85