miRBase entry: mes-MIR169x

Stem-loop mes-MIR169x


Accession
MI0024274
Description
Manihot esculenta mes-MIR169x precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169x
(28 sentences)

Sequence

gUAGCCAAGGAUGACUUGCCCGcuacacugagaaggcuuugaucuuguuugcuguuagaacuuuuuuuuggcuuugggcaaucauccuugguuau
((((((((((((((.(((((((...((..(((((((.((((((..........)))))).))))))).))....)))))))))))))))))))))

Structure
              C       -cua  cu       c      cuug 
gUAGCCAAGGAUGA UUGCCCG    ca  gagaagg uuugau    u
|||||||||||||| |||||||    ||  ||||||| ||||||     
uauugguuccuacu aacgggu    gu  uuuuuuc agauug    u
              -       uucg  -u       a      ucgu 


Annotation confidence Not enough data
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Genome context
scaffold03800: 17695-17789 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR169x
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR169x

Accession MIMAT0029232
Description Manihot esculenta mes-miR169x mature miRNA
Sequence 2 - UAGCCAAGGAUGACUUGCCCG - 22
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269