Stem-loop mes-MIR169t

Accession

MI0024270

Description

Manihot esculenta mes-MIR169t precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169t
(28 sentences)

Sequence

gUAGCCAAGGAUGACUUGCCCGauccauauucugagagguuucauggguauauuauuuauauaugcaugacgcucuuguggcuacgggcagucuccuuggcuau
(((((((((((.((((.((((((.((((.....(((((...(((((.((((((.....)))))).)))))..))))))))).).))))))))))))))))))))

Structure

           U    U     - u    auucu     guu     g      u 
gUAGCCAAGGA GACU GCCCG a ccau     gagag   ucaug guauau a
||||||||||| |||| ||||| | ||||     |||||   ||||| |||||| u
uaucgguuccu cuga cgggc u ggug     uucuc   aguac uauaua u
           -    -     a c    -----     -gc     g      u 

Annotation confidence Not enough data

Genome context

scaffold05005: 7537-7640 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from mes-MIR169t

Mature mes-miR169t

• Accession: MIMAT0029228
• Description: Manihot esculenta mes-miR169t mature miRNA
• Sequence: 2 - UAGCCAAGGAUGACUUGCCCG - 22
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269