miRBase entry: mes-MIR169r

Stem-loop mes-MIR169r


Accession
MI0024268
Description
Manihot esculenta mes-MIR169r precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169r
(28 sentences)

Sequence

gUAGCCAAGGAUGACUUGCCCGcuacacugagaaggcauugaucuuguuugcuguuagaacuuuuuuuuggcuuugggcaaucauccuugguuau
((((((((((((((.((((((((((....((((((...(((((..........)))))..))))))..))))...))))))))))))))))))))

Structure
              C      ---    cacu      gca     cuug 
gUAGCCAAGGAUGA UUGCCC   Gcua    gagaag   uugau    u
|||||||||||||| ||||||   ||||    ||||||   |||||     
uauugguuccuacu aacggg   cggu    uuuuuc   gauug    u
              -      uuu    --uu      -aa     ucgu 


Annotation confidence Not enough data
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Genome context
scaffold05005: 6216-6310 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mes-MIR169r
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR169r

Accession MIMAT0029226
Description Manihot esculenta mes-miR169r mature miRNA
Sequence 2 - UAGCCAAGGAUGACUUGCCCG - 22
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269