miRBase entry: mes-MIR169c

Stem-loop mes-MIR169c


Accession
MI0024253
Description
Manihot esculenta mes-MIR169c precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
10 open access papers mention mes-MIR169c
(28 sentences)

Sequence

CAGCCAAGGAUGACUUGCCGGcuagcucuaguauacuaguaugcuuauauuuuuccauuuaacuggcaacuagauggucggcaagucaucucuggcu
.(((((.(((((((((((((((((..((((((...(((((.....................)))))..))))))))))))))))))))))).)))))

Structure
C     A                 gc      aua     augcuuaua 
 AGCCA GGAUGACUUGCCGGcua  ucuagu   cuagu         u
 ||||| |||||||||||||||||  ||||||   |||||         u
 ucggu ucuacugaacggcuggu  agauca   gguca         u
-     c                 --      -ac     auuuaccuu 


Annotation confidence Not enough data
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Genome context
scaffold11341: 672352-672448 [+]

Database links

Mature mes-miR169c

Accession MIMAT0029211
Description Manihot esculenta mes-miR169c mature miRNA
Sequence 1 - CAGCCAAGGAUGACUUGCCGG - 21
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269