Stem-loop mes-MIR160c

Accession

MI0024223

Description

Manihot esculenta mes-MIR160c precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

7 open access papers mention mes-MIR160c
(20 sentences)

Sequence

ggcuaUGCCUGGCUCCCUGUAUGCCGcaagcuagaguucaauccccacuguggauuggcuguugccgguggcgugcgaggagccaagcauaccc
((.(((((.(((((((.((((((((((..((.(.(((.((((((.......))))))))).).))..)))))))))).))))))).))))))).

Structure

-  c     C       C          aa  u g   u      cc 
 gg uaUGC UGGCUCC UGUAUGCCGc  gc a agu caaucc  a
 || ||||| ||||||| ||||||||||  || | ||| ||||||  c
 cc auacg accgagg gcgugcggug  cg u ucg guuagg  u
c  -     a       a          gc  u g   -      ug 

Annotation confidence Not enough data

Genome context

scaffold08404: 8406-8499 [-]

Mature mes-miR160c

• Accession: MIMAT0029181
• Description: Manihot esculenta mes-miR160c mature miRNA
• Sequence: 6 - UGCCUGGCUCCCUGUAUGCCG - 26
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269