miRBase entry: ghr-MIR169b

Stem-loop ghr-MIR169b


Accession
MI0024199
Description
Gossypium hirsutum ghr-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
11 open access papers mention ghr-MIR169b
(22 sentences)

Sequence

uaaaguagugCAGCCAAGGAUGAUUUGCCGGcuaggcuuucucuuccacuuaucugaguuguuuuuugauacucguuaauuacucaaaacuauuuauguuaaugguuugaacuguucaugggaacgggaaguuaauuauuuaauacauaaaugaaucaaaccuuuguuggaggagauaaucggcaaguugucuuuggcuacguuucuuuc
.((((.((((.((((((((((((((((((((.((.....(((((((((......(((((.(((...(((...)))..))).))))).(((.......)))...(((((((.((((((....))))))........(((((((.....))))))).))))))).....))))))))))).)))))))))))))))))))).)))).)))).

Structure
u    u    C                    c  ggcuu         ---------------------------------------------------------------------------cuuauc     u   uuu   u 
 aaag agug AGCCAAGGAUGAUUUGCCGG ua     ucucuucca                                                                                 ugagu guu   uga  
 |||| |||| |||||||||||||||||||| ||     |||||||||                                                                                 ||||| |||   ||| a
 uuuc uugc ucgguuucuguugaacggcu au     agaggaggu                                                                                 acuca uaa   gcu  
c    u    a                    a  -----         uguuuccaaacuaaguaaauacauaauuuauuaauugaagggcaaggguacuugucaaguuugguaauuguauuuaucaaa     u   -uu   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR169b

Accession MIMAT0029157
Description Gossypium hirsutum ghr-miR169b mature miRNA
Sequence 11 - CAGCCAAGGAUGAUUUGCCGG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138860
    A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
    "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
    "Mol Plant (2012) 5:889-900