miRBase entry: hcmv-mir-UL69

Stem-loop hcmv-mir-UL69


Accession
MI0024165
Description
Human cytomegalovirus hcmv-mir-UL69 precursor miRNA


Sequence

aggCCAGAGGCUAAGCCGAAACCGuccggggaagcgggcgcgaguuuuccgacuuagccuuuggugc
..(((((((((((((.((((((((((((......))))))...))))..)).)))))))))))))..

Structure
ag             C  --    ---      gg 
  gCCAGAGGCUAAG CG  AAAC   CGuccg  g
  ||||||||||||| ||  ||||   ||||||   
  ugguuuccgauuc gc  uuug   gcgggc  a
cg             a  cu    agc      ga 


Annotation confidence Not enough data
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Genome context
HEHCMVCG: 96898-96964 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from hcmv-mir-UL69
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hcmv-miR-UL69

Accession MIMAT0029123
Description Human cytomegalovirus hcmv-miR-UL69 mature miRNA
Sequence 4 - CCAGAGGCUAAGCCGAAACCG - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22715351
    The microRNA Transcriptome of Human Cytomegalovirus (HCMV)
    "Meshesha MK, Veksler-Lublinsky I, Isakov O, Reichenstein I, Shomron N, Kedem K, Ziv-Ukelson M, Bentwich Z, Avni YS"
    "Open Virol J (2012) 6:38-48