Stem-loop sequence gga-mir-7455

Accession

MI0024125 (change log)

Description

Gallus gallus miR-7455 stem-loop

Literature search

1 open access papers mention gga-mir-7455
(1 sentences)

Stem-loop

   --uc     g  -         c   c   g 
5'     gcgcg cg cggagggag ggg ggu a
       ||||| || ||||||||| ||| ||| a
3'     cgcgc gc gccucccuu ccc ccg u
   caca     g  u         -   -   u 

Deep sequencing

87 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (J_AD0151G21_t874e874.b1).

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 90394982-90395041 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024125

Mature sequence gga-miR-7455-5p

• Accession: MIMAT0029064
• Sequence: 1 - ucgcgcggcgcggagggagcggg - 23
• Deep sequencing: 16 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-7455-5p
  • miRDB:gga-miR-7455-5p

Mature sequence gga-miR-7455-3p

• Accession: MIMAT0029065
• Sequence: 38 - cuucccuccgucggcgcgcacac - 60
• Deep sequencing: 71 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-7455-3p
  • miRDB:gga-miR-7455-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).