miRBase entry: oan-mir-30c-1

Stem-loop oan-mir-30c-1


Accession
MI0024093
Description
Ornithorhynchus anatinus oan-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

101644 reads, 2031 reads per million, 5 experiments
UGUAAACAUCCUACACUCUCAGCugucaagucaaggaggcUGGGAGAGGGUUGUUUACUCC
.(((((((.(((...(((((((((.((........))))))))))).))).)))))))...

Structure
--U       U   ACA         g  aag 
   GUAAACA CCU   CUCUCAGCu uc   u
   ||||||| |||   ||||||||| ||    
   CAUUUGU GGG   GAGGGUcgg ag   c
CCU       U   --A         -  gaa 


Annotation confidence High
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Genome context
Ultra467: 480344-480404 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-30c-5p

Accession MIMAT0006911
Description Ornithorhynchus anatinus oan-miR-30c-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCAGC - 23
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-30c-1-3p

Accession MIMAT0031028
Description Ornithorhynchus anatinus oan-miR-30c-1-3p mature miRNA
Sequence 41 - UGGGAGAGGGUUGUUUACUCC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45