miRBase entry: mdo-mir-7398k-2

Stem-loop mdo-mir-7398k-2


Accession
MI0024021
Description
Monodelphis domestica mdo-mir-7398k-2 precursor miRNA
Gene family
MIPF0001643; mir-7398


Sequence

17949 reads, 295 reads per million, 5 experiments
UGUGUGGAGGUAAGGAACUACGUcguguucuaucucucgGUAAAUCCUUGCCUCUCACUGU
.(((.(((((((((((..(((..((.(........).)))))..))))))))))))))...

Structure
--U   U           AC   GU  u uuc 
   GUG GGAGGUAAGGA  UAC  cg g   u
   ||| |||||||||||  |||  || |    
   CAC UCUCCGUUCCU  AUG  gc c   a
UGU   -           AA   --  u ucu 


Annotation confidence Not enough data
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Genome context
chrX: 57285473-57285533 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from mdo-mir-7398k-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-7398k-5p

Accession MIMAT0028906
Description Monodelphis domestica mdo-miR-7398k-5p mature miRNA
Sequence 1 - UGUGUGGAGGUAAGGAACUACGU - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-7398k-2-3p

Accession MIMAT0031052
Description Monodelphis domestica mdo-miR-7398k-2-3p mature miRNA
Sequence 40 - GUAAAUCCUUGCCUCUCACUGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45