miRBase entry: mdo-mir-1544e-2

Stem-loop mdo-mir-1544e-2


Accession
MI0023924
Description
Monodelphis domestica mdo-mir-1544e-2 precursor miRNA
Gene family
MIPF0001645; mir-1544


Sequence

1397 reads, 31 reads per million, 5 experiments
GCGCCCAGGGAUAUAAUAGCGGuaaacuucaaagaccACUUUUCUAUCCCUGGUACUGG
....(((((((((.((.((.(((...........))).)).)).)))))))))......

Structure
--GCGC         U  U  C   aaac 
      CCAGGGAUA AA AG GGu    u
      ||||||||| || || |||    u
      GGUCCCUAU UU UC cca    c
GGUCAU         C  U  A   gaaa 


Annotation confidence Not enough data
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Genome context
chrX: 13973354-13973412 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mdo-mir-1544e-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1544e-5p

Accession MIMAT0031033
Description Monodelphis domestica mdo-miR-1544e-5p mature miRNA
Sequence 1 - GCGCCCAGGGAUAUAAUAGCGG - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-1544e-3p

Accession MIMAT0031034
Description Monodelphis domestica mdo-miR-1544e-3p mature miRNA
Sequence 38 - ACUUUUCUAUCCCUGGUACUGG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45