Stem-loop mdo-mir-30d

Accession

MI0023834

Description

Monodelphis domestica mdo-mir-30d precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

794621 reads, 12809 reads per million, 5 experiments

UGUAAACAUCCUUGACUGGAAGCuguaaggugcuuggaggagcUUUCAGUCGGAUGUUUACAGC
(((((((((((..(((((((((((................))))))))))))))))))))))..

Structure

--           UU           guaaggu 
  UGUAAACAUCC  GACUGGAAGCu       g
  |||||||||||  |||||||||||        
  ACAUUUGUAGG  CUGACUUUcga       c
CG           --           ggagguu 

Annotation confidence High

Genome context

chr4: 424720167-424720230 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-30d

Mature mdo-miR-30d-5p

• Accession: MIMAT0028622
• Description: Monodelphis domestica mdo-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGC - 23
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-30d-3p

• Accession: MIMAT0028623
• Description: Monodelphis domestica mdo-miR-30d-3p mature miRNA
• Sequence: 44 - UUUCAGUCGGAUGUUUACAGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45